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<a href="CleanTracks_8cxx.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">/*</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment"> * Copyright (c) 2001-2004 MUSIC TECHNOLOGY GROUP (MTG)</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment"> * UNIVERSITAT POMPEU FABRA</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment"> * This program is free software; you can redistribute it and/or modify</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment"> * it under the terms of the GNU General Public License as published by</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment"> * the Free Software Foundation; either version 2 of the License, or</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment"> * (at your option) any later version.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment"> * This program is distributed in the hope that it will be useful,</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment"> * but WITHOUT ANY WARRANTY; without even the implied warranty of</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment"> * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment"> * GNU General Public License for more details.</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment"> * You should have received a copy of the GNU General Public License</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment"> * along with this program; if not, write to the Free Software</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment"> * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#include "<a class="code" href="CleanTracks_8hxx.html">CleanTracks.hxx</a>"</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="preprocessor">#include <iostream></span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> </div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> </div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="keyword">namespace </span>CLAM {</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> </div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> </div>
<div class="line"><a name="l00028"></a><span class="lineno"><a class="code" href="classCLAM_1_1CleanTracksConfig.html#a89dae6585642f58d821cba4575998dd4"> 28</a></span>  <span class="keywordtype">void</span> <a class="code" href="classCLAM_1_1CleanTracksConfig.html#a89dae6585642f58d821cba4575998dd4" title="The concrete dynamic type constructor calls DefaultInit().">CleanTracksConfig::DefaultInit</a>()</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  {</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> </div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  AddAll();</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <a class="code" href="classCLAM_1_1DynamicType.html#a74d1557beda060a62f39b09f0c477fad" title="Method used to resize the data space of the dynamic type, necessary when some AddXXX() / RemoveXXX() ...">UpdateData</a>();</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> </div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="comment">//Default values</span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  SetMaxDropOut(3);</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  SetMinLength(3);</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  SetFreqDev(20);</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  SetSamplingRate(44100);</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  SetSpecSize(22050);</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  }</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a name="l00042"></a><span class="lineno"><a class="code" href="classCLAM_1_1CleanTracks.html#a9c873c24139e90592809d0e540cf0d7b"> 42</a></span>  <a class="code" href="classCLAM_1_1CleanTracks.html#a9c873c24139e90592809d0e540cf0d7b">CleanTracks::CleanTracks</a>():mTrajectoryArray(100,100),mSearchTrajectories(mTrajectoryArray)</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  {</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <a class="code" href="classCLAM_1_1Processing.html#a586222b159a5b27b5bbb830a125fccc0" title="Configuration change method.">Configure</a>(<a class="code" href="classCLAM_1_1CleanTracksConfig.html" title="Config class for the CleanTracks Processing.">CleanTracksConfig</a>());</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  }</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a name="l00047"></a><span class="lineno"><a class="code" href="classCLAM_1_1CleanTracks.html#ad1e741b50df83460ac9f0719a00fd663"> 47</a></span>  <a class="code" href="classCLAM_1_1CleanTracks.html#a9c873c24139e90592809d0e540cf0d7b">CleanTracks::CleanTracks</a>(<span class="keyword">const</span> <a class="code" href="classCLAM_1_1CleanTracksConfig.html" title="Config class for the CleanTracks Processing.">CleanTracksConfig</a> &c ):mTrajectoryArray(100,100),mSearchTrajectories(mTrajectoryArray)</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  {</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  <a class="code" href="classCLAM_1_1Processing.html#a586222b159a5b27b5bbb830a125fccc0" title="Configuration change method.">Configure</a>(c);</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  }</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> </div>
<div class="line"><a name="l00052"></a><span class="lineno"><a class="code" href="classCLAM_1_1CleanTracks.html#a7da35de338456ff73e0dd2599b50d5f5"> 52</a></span>  <a class="code" href="classCLAM_1_1CleanTracks.html#a7da35de338456ff73e0dd2599b50d5f5">CleanTracks::~CleanTracks</a>()</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  {}</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="comment">/* Configure the Processing Object according to the Config object */</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> </div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <span class="keywordtype">bool</span> CleanTracks::ConcreteConfigure(<span class="keyword">const</span> <a class="code" href="classCLAM_1_1ProcessingConfig.html" title="This is an abstract class which serves as interface for configuration classes used as processing obje...">ProcessingConfig</a>& c)</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  {</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> </div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <a class="code" href="classCLAM_1_1Processing.html#afc32b9790688f2875b42e4ab169389c6" title="Helper template to convert a reference to a ProcessingConfig to the concrete ProcessingConfig specifi...">CopyAsConcreteConfig</a>(mConfig, c);</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> </div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  mMaxDropOut = mConfig.GetMaxDropOut();</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  mMinLength= mConfig.GetMinLength();</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  mFreqDev= 1.0/mConfig.GetFreqDev();</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  mSamplingRate= mConfig.GetSamplingRate();</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  mSpecSize= mConfig.GetSpecSize();</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  }</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> </div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <span class="comment">//Process</span></div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> </div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <span class="comment">//Supervised mode</span></div>
<div class="line"><a name="l00080"></a><span class="lineno"><a class="code" href="classCLAM_1_1CleanTracks.html#a988098e96434d3291c0da90ad23365fe"> 80</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classCLAM_1_1CleanTracks.html#a988098e96434d3291c0da90ad23365fe" title="Supervised mode execution method (using ports)">CleanTracks::Do</a>(<span class="keywordtype">void</span>)</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  {</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <a class="code" href="Assert_8hxx.html#a0013fa617be6fec21a9ad7180e7d8cff" title="An assertion is a check on an expression that must be true given that all the contracts are fullfille...">CLAM_ASSERT</a>(<span class="keyword">false</span>,<span class="stringliteral">"CleanTracks::Do(): Supervised mode not implemented"</span>);</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  }</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> </div>
<div class="line"><a name="l00086"></a><span class="lineno"><a class="code" href="classCLAM_1_1CleanTracks.html#aaf1301254edc4ec289e4cb9320d7b12f"> 86</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classCLAM_1_1CleanTracks.html#a988098e96434d3291c0da90ad23365fe" title="Supervised mode execution method (using ports)">CleanTracks::Do</a>(<a class="code" href="classCLAM_1_1Array.html">Array<SpectralPeakArray*></a>& peakArrayArray)</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  {</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  LoadTracks(peakArrayArray);</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  FindContinuations();</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  JoinContinuations(peakArrayArray);</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  Clean(peakArrayArray);</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  UpdateTrackIds(peakArrayArray);</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  }</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="code" href="classCLAM_1_1CleanTracks.html#a15ae10caf4b308a8e1dfe853c96f6043"> 97</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classCLAM_1_1CleanTracks.html#a988098e96434d3291c0da90ad23365fe" title="Supervised mode execution method (using ports)">CleanTracks::Do</a>(<a class="code" href="classCLAM_1_1Segment.html" title="Processing Data class to encapsulate a CLAM segment.">Segment</a>& segment)</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  {</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> nFrames=segment.<a class="code" href="classCLAM_1_1Segment.html#af534fd6469bc9ef78b9d359e7f503019" title="Returns the number of frames in segment.">GetnFrames</a>();</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <a class="code" href="classCLAM_1_1Array.html">Array<SpectralPeakArray*></a> spectralPeakArrayArray;</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  spectralPeakArrayArray.<a class="code" href="classCLAM_1_1Array.html#a811565ea3bbfe0bc9fa7c4e48b3210e4">Resize</a>(nFrames);</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<nFrames;i++)</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  {</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  spectralPeakArrayArray.<a class="code" href="classCLAM_1_1Array.html#acea72efe2bf606ae940d50a284a8e5ad">AddElem</a>(&segment.<a class="code" href="classCLAM_1_1Segment.html#a6706801bc00c3ff78f5dd8f5e648957c" title="Returns a reference to the frame found in a given position.">GetFrame</a>(i).GetSpectralPeakArray());</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  }</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <span class="keywordflow">return</span> <a class="code" href="classCLAM_1_1CleanTracks.html#a988098e96434d3291c0da90ad23365fe" title="Supervised mode execution method (using ports)">Do</a>(spectralPeakArrayArray);</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> </div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  }</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="keywordtype">void</span> CleanTracks::LoadTracks(<a class="code" href="classCLAM_1_1Array.html">Array<SpectralPeakArray*></a>& peakArrayArray)</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  {</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<peakArrayArray.<a class="code" href="classCLAM_1_1Array.html#a4679b3a2a2921d6bf15d63c8312fdfc3">Size</a>();i++)</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  {</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> z=0;z<peakArrayArray[i]->GetnIndexedPeaks();z++)</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  {</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <a class="code" href="structCLAM_1_1STrajectory.html">TTrajectory</a> tmpTrajectory;</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#a16492b727bdfce10ffec70240899462d">id</a>=peakArrayArray[i]->GetIndex(z);</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#a72f82722fd68be9b760930e6b5329622">beginPos</a>=i;</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#adac2f8d19715e4f4988488553145abcb">initialFreq</a>=tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#a34f74ce201914090dedb3b182f4c57e9">finalFreq</a>=peakArrayArray[i]->GetFreq(z);<span class="comment">//At the beginning, initial=final</span></div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#a2f5515052096a2e525f87c14b8a4a3a6">initialMag</a>=tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#a665b45d98df5522611cc1c7143952411">finalMag</a>=peakArrayArray[i]->GetMag(z);</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#ad52fcb100dbb8b701919b9096df58038">length</a>=1;</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#a6ab81c6b92fcab4e47a36f36a1f56353">continuedAtId</a>=-1;</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  AddTrajectory(tmpTrajectory);</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  }</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  }</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  }</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="keywordtype">void</span> CleanTracks::FindContinuations()</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  {</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="keywordtype">int</span> firstCandidatable = 0;</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span> </div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0; i<mTrajectoryArray.<a class="code" href="classCLAM_1_1Array.html#a4679b3a2a2921d6bf15d63c8312fdfc3">Size</a>(); i++)</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  {</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="keyword">const</span> <a class="code" href="namespaceCLAM.html#abef070b2390625af76ef6538c5155b43">TTrajectory</a> & toBeAppended = mTrajectoryArray[i];</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span> <span class="comment">/*</span></div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> <span class="comment"> // Non-candidatables now won't be candidatables never</span></div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span> <span class="comment"> while (firstCandidatable<i && toBeAppended.beginPos <</span></div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span> <span class="comment"> mTrajectoryArray[firstCandidatable].beginPos+</span></div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span> <span class="comment"> mTrajectoryArray[firstCandidatable].length+mMaxDropOut)</span></div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> <span class="comment"> firstCandidatable++;</span></div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> <span class="comment">*/</span></div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <span class="keywordtype">bool</span> thereIsCandidate=<span class="keyword">false</span>;</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <span class="comment">// MRJ: Transition of Frequency deviation from absolute hertz to</span></div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="comment">// a %. We multiply this factor by the currently considered trajectory</span></div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  <span class="comment">// final frequency</span></div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> bestFreqDif=mFreqDev * mTrajectoryArray[i].finalFreq ;</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="keywordtype">int</span> bestCandidate=0;</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> </div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <span class="comment">// Get the best 'candidate' to be followed by the track 'toBeAppended'</span></div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> k=firstCandidatable; k<i; k++)</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  {</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  <span class="keyword">const</span> <a class="code" href="namespaceCLAM.html#abef070b2390625af76ef6538c5155b43">TTrajectory</a> & candidate = mTrajectoryArray[k];</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span> </div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  <span class="comment">// Suposing that they are ordered by start frame,</span></div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <span class="comment">// there is a point from which all the candidates are invalid</span></div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <span class="keywordflow">if</span> (candidate.beginPos>=toBeAppended.beginPos) <span class="keywordflow">break</span>;</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> </div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <span class="keyword">const</span> <a class="code" href="namespaceCLAM.html#a33598bc354b7042bc0d6529a155937a7">TSize</a> dropOut=</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  toBeAppended.beginPos-</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  (candidate.beginPos+candidate.length);</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span> </div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="comment">// 'candidate' should end before 'toBeAppended' starts</span></div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  <span class="keywordflow">if</span> (dropOut<=0) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <span class="comment">// ...but not too much</span></div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="keywordflow">if</span> (dropOut>mMaxDropOut) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span> </div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="comment">// ...and the frequency distance should be the better one</span></div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="keyword">const</span> <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> frequencyDistance =</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  <a class="code" href="namespaceCLAM.html#a1a66f31c63ad9961ad40c4291dc7f648">Abs</a>(toBeAppended.initialFreq-candidate.finalFreq);</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  <span class="keywordflow">if</span> (frequencyDistance >= bestFreqDif) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> </div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  bestFreqDif=frequencyDistance;</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  bestCandidate=k;</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  thereIsCandidate=<span class="keyword">true</span>;</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  }</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span> </div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <span class="comment">// If there is no candidate, toBeAppended is not appended, next...</span></div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keywordflow">if</span> (!thereIsCandidate) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> </div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <a class="code" href="namespaceCLAM.html#abef070b2390625af76ef6538c5155b43">TTrajectory</a> & candidateTrajectory = mTrajectoryArray[bestCandidate];</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span> </div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="comment">// Check that the best candidate for 'toBeAppended'</span></div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="comment">// is not the best one to another</span></div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span> </div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  <span class="comment">// Unused variable: const TSize candidateEnd = candidateTrajectory.beginPos+candidateTrajectory.length;</span></div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span> </div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  <a class="code" href="namespaceCLAM.html#a33598bc354b7042bc0d6529a155937a7">TSize</a> previousFollowerPosition = candidateTrajectory.continuedAtId;</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <span class="comment">// Candidate has already has been attached?</span></div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="keywordflow">if</span> (previousFollowerPosition != -1)</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  {</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <a class="code" href="namespaceCLAM.html#abef070b2390625af76ef6538c5155b43">TTrajectory</a> & previousFollower = mTrajectoryArray[previousFollowerPosition];</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <span class="keyword">const</span> <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> frequencyDistance =</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <a class="code" href="namespaceCLAM.html#a1a66f31c63ad9961ad40c4291dc7f648">Abs</a>(previousFollower.initialFreq-candidateTrajectory.finalFreq);</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <span class="keywordflow">if</span> (frequencyDistance <= bestFreqDif) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  }</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span> </div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  candidateTrajectory.continuedAtId=toBeAppended.id;</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span> </div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  }</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  }</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span> </div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="keywordtype">void</span> CleanTracks::JoinContinuations(Array<SpectralPeakArray*>& peakArrayArray)</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  {</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<mTrajectoryArray.<a class="code" href="classCLAM_1_1Array.html#a4679b3a2a2921d6bf15d63c8312fdfc3">Size</a>();i++)</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  {</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <span class="comment">// Unused variable: const int id = mTrajectoryArray[i].id;</span></div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="keywordtype">int</span> contAt = mTrajectoryArray[i].continuedAtId;</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  <span class="comment">// Unused variable: const int begPos = mTrajectoryArray[i].beginPos;</span></div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <span class="comment">// Unused variable: const int lastfreq=int(mTrajectoryArray[i].finalFreq);</span></div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="keywordflow">while</span>(mTrajectoryArray[i].continuedAtId!=-1)</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  {</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  contAt=mTrajectoryArray[i].continuedAtId;</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  InterpolatePeaks(mTrajectoryArray[i], peakArrayArray);</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  }</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  }</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  }</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span> </div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span> </div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  <span class="keywordtype">void</span> CleanTracks::Clean(Array<SpectralPeakArray*>& peakArrayArray)</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  {</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<peakArrayArray.Size();i++)</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  {</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <span class="keywordtype">int</span> nDeleted=0;</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> z=0;z<peakArrayArray[i]->GetnIndexedPeaks();z++)</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  {</div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> <span class="keywordtype">id</span>=peakArrayArray[i]->GetIndex(z-nDeleted);</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> trajectoryPosition=FindTrajectoryPosition(<span class="keywordtype">id</span>);</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span> </div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="keywordflow">if</span> (trajectoryPosition==-1) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keywordflow">if</span> (mTrajectoryArray[trajectoryPosition].length>=mMinLength) <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span> </div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <span class="comment">//modified</span></div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  peakArrayArray[i]->DeleteSpectralPeak(z-nDeleted);</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  peakArrayArray[i]->SetIsIndexUpToDate(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  peakArrayArray[i]->DeleteIndex(<span class="keywordtype">id</span>);</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  mTrajectoryArray[trajectoryPosition].length--;<span class="comment">//update length</span></div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  <span class="keywordflow">if</span>(mTrajectoryArray[trajectoryPosition].length==0)</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  mTrajectoryArray.<a class="code" href="classCLAM_1_1Array.html#aa64e16a4d2669908fd269d6f5bf9ba96">DeleteElem</a>(trajectoryPosition);</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  nDeleted++;</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  }</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  }</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  }</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span> </div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span> </div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="keywordtype">void</span> CleanTracks::UpdateTrackIds(Array<SpectralPeakArray*>& peakArrayArray)</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  {</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<peakArrayArray.Size();i++)</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  {</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> z=0;z<peakArrayArray[i]->GetnIndexedPeaks();z++)</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  {</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> currentTrackid=peakArrayArray[i]->GetIndex(z);</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> newTrackid=FindTrajectoryPosition(currentTrackid);</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  <span class="keywordflow">if</span>(newTrackid!=currentTrackid)</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  {</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  peakArrayArray[i]->SetIndex(z,newTrackid);</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  peakArrayArray[i]->SetIsIndexUpToDate(<span class="keyword">true</span>);<span class="comment">//needed?</span></div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  }</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  }</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  }</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  }</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span> </div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span> </div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  <span class="keywordtype">void</span> CleanTracks::AddTrajectory(<a class="code" href="namespaceCLAM.html#abef070b2390625af76ef6538c5155b43">TTrajectory</a>& trajectory)</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  {</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <span class="comment">// would be faster using searcharray.find?</span></div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> pos = FindTrajectoryPosition(trajectory.id);</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keywordflow">if</span>(pos==-1)</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  {</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="comment">// not found, new id, add it</span></div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  mTrajectoryArray.<a class="code" href="classCLAM_1_1Array.html#acea72efe2bf606ae940d50a284a8e5ad">AddElem</a>(trajectory);</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  }</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  {</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="comment">// if found, length and last data are updated</span></div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  mTrajectoryArray[pos].length++;</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  mTrajectoryArray[pos].finalFreq=trajectory.finalFreq;</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  mTrajectoryArray[pos].finalMag=trajectory.finalMag;</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  }</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  }</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span> </div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  <span class="keywordtype">void</span> CleanTracks::InterpolatePeaks(<a class="code" href="namespaceCLAM.html#abef070b2390625af76ef6538c5155b43">TTrajectory</a>& fromTrajectory, Array<SpectralPeakArray*>& peakArrayArray)</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  {</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> newTrajPos=FindTrajectoryPosition(fromTrajectory.continuedAtId);</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <a class="code" href="Assert_8hxx.html#a0013fa617be6fec21a9ad7180e7d8cff" title="An assertion is a check on an expression that must be true given that all the contracts are fullfille...">CLAM_ASSERT</a>(newTrajPos>-1,<span class="stringliteral">"CleanTracks::InterpolatePeaks:Negative Index for track"</span>);</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  <span class="keyword">const</span> <a class="code" href="namespaceCLAM.html#abef070b2390625af76ef6538c5155b43">TTrajectory</a> & toTrajectory = mTrajectoryArray[newTrajPos];</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="keywordtype">int</span> gap=toTrajectory.beginPos-(fromTrajectory.beginPos+fromTrajectory.length);</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> freqSlope=(toTrajectory.initialFreq-fromTrajectory.finalFreq)/(gap+1);</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> magSlope=(toTrajectory.initialMag-fromTrajectory.finalMag)/(gap+1);</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> currentFreq=fromTrajectory.finalFreq;</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> currentMag=fromTrajectory.finalMag;</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> currentBinPos;</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  <span class="keywordtype">int</span> currentBinWidth;</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  <a class="code" href="namespaceCLAM.html#ab9c6321b061069797fcc173f61e8111a">TData</a> lastBinPos=0;</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  <span class="keywordtype">int</span> z;</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  <span class="keywordflow">for</span>(z=fromTrajectory.beginPos+fromTrajectory.length;z<toTrajectory.beginPos;z++)</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  {</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  currentFreq+=freqSlope;</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  currentMag+=magSlope;</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  currentBinPos=2*currentFreq*mSpecSize/mSamplingRate;</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  currentBinWidth=<a class="code" href="classint.html">int</a>(currentBinPos-lastBinPos);</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  lastBinPos=currentBinPos;</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  SpectralPeak tmpPeak;</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  tmpPeak.AddPhase();</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  tmpPeak.AddBinWidth();</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  tmpPeak.AddBinPos();</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  tmpPeak.UpdateData();</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  tmpPeak.SetFreq(currentFreq);</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  tmpPeak.SetMag(currentMag);</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  tmpPeak.SetScale(EScale(<a class="code" href="classCLAM_1_1EScale.html#adb404ba8985dab43c50daec75abf0255ac6d75a019729c3cc1eaec8faa6ebede6">EScale::eLog</a>));</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  tmpPeak.SetBinPos(currentBinPos);</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  tmpPeak.SetBinWidth(currentBinWidth);</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  peakArrayArray[z]->AddSpectralPeak(tmpPeak, <span class="keyword">true</span>, fromTrajectory.id);</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  <span class="comment">//Peaks should be sorted in the frames where added !!!!!</span></div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  }</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  <span class="comment">//Need to only update index in the next frames</span></div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keywordflow">for</span>(z=toTrajectory.beginPos;z<toTrajectory.beginPos+toTrajectory.length;z++)</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  {</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  peakArrayArray[z]->SetIndex(peakArrayArray[z]->GetPositionFromIndex(toTrajectory.id),fromTrajectory.id);</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  }</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  fromTrajectory.length+=(gap+toTrajectory.length);</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  fromTrajectory.continuedAtId=mTrajectoryArray[newTrajPos].continuedAtId;</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  fromTrajectory.finalFreq=mTrajectoryArray[newTrajPos].finalFreq;</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  mTrajectoryArray.<a class="code" href="classCLAM_1_1Array.html#aa64e16a4d2669908fd269d6f5bf9ba96">DeleteElem</a>(newTrajPos);</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span> </div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  }</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span> </div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  <a class="code" href="namespaceCLAM.html#af934e7dd545c1aed1cd0fd551c135122">TIndex</a> CleanTracks::FindTrajectoryPosition(<a class="code" href="namespaceCLAM.html#af934e7dd545c1aed1cd0fd551c135122">TIndex</a> <span class="keywordtype">id</span>)</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  {</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  <span class="comment">// For Empty arrays return not found</span></div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <span class="keywordflow">if</span> (mTrajectoryArray.<a class="code" href="classCLAM_1_1Array.html#a4679b3a2a2921d6bf15d63c8312fdfc3">Size</a>()==0)</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <span class="keywordflow">return</span> -1;</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <span class="comment">//we have to check whether it is first or last track</span></div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <span class="keywordflow">if</span> (<span class="keywordtype">id</span> == mTrajectoryArray[0].<span class="keywordtype">id</span>)</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <span class="keywordflow">return</span> 0;</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  <span class="keywordflow">if</span> (<span class="keywordtype">id</span> == mTrajectoryArray[mTrajectoryArray.<a class="code" href="classCLAM_1_1Array.html#a4679b3a2a2921d6bf15d63c8312fdfc3">Size</a>()-1].id)</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <span class="keywordflow">return</span> mTrajectoryArray.<a class="code" href="classCLAM_1_1Array.html#a4679b3a2a2921d6bf15d63c8312fdfc3">Size</a>()-1;</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span> </div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  <a class="code" href="namespaceCLAM.html#abef070b2390625af76ef6538c5155b43">TTrajectory</a> tmpTrajectory;</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  tmpTrajectory.<a class="code" href="structCLAM_1_1STrajectory.html#a16492b727bdfce10ffec70240899462d">id</a>=id;</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <a class="code" href="namespaceCLAM.html#af934e7dd545c1aed1cd0fd551c135122">TIndex</a> trajectoryPosition = mSearchTrajectories.<a class="code" href="classCLAM_1_1SearchArray.html#a71f9d74e00c701872eb24b8c92d3e16a">Find</a>(tmpTrajectory);</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span> </div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  <span class="comment">//note that Find returns the closest index and that does not guarantee that is the exact one</span></div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  <span class="keywordflow">if</span> (trajectoryPosition!=-1)</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  <span class="keywordflow">if</span> (mTrajectoryArray[trajectoryPosition].<span class="keywordtype">id</span>!=<span class="keywordtype">id</span>)</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  <span class="keywordflow">return</span> -1;</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  <span class="keywordflow">return</span> trajectoryPosition;</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  }</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span> </div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span> };<span class="comment">//namespace</span></div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span> </div>
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